If I am doing a full-coin shot I usually publish at 800x800. For variety shots like you're showing I go with 1200x800, so I keep to 800 tall.
And if you have an IKEA near you, they have the Jansjo's for $10. If not, $20 on ebay is a good deal. Nice thing about them is they run so cool you can use most any method to diffuse them.
You probably figured out already that the more you can zoom the camera, the better the image will be, and will get rid of the vignetting (black circle). It's better to increase the magnification optically with camera zoom, and then downsize the image to the size needed for web publishing, than it is to crop the image.
Also, if you fix the camera on infinity focus you'll get a more consistent quality. Don't let the camera do its autofocus mumbo jumbo, as it often won't focus where you want it to. Use the microscope focus adjustment to fine-tune your focus.
Ray
PS...you also probably noticed that you can't get the full field of the image in focus. This is because the microscope objective is likely a "biological" type, and is not designed for "flat field" use. But not to worry, if you want to get it all in focus you can take a few images, focused at different focal planes, and then use a program to stitch together only the in-focus areas. This is called focus stacking and there are some free programs that do it for you...
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